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Filter Measurements and Plot Data
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A_Mock is less than
A_WT is greater than
A_ΔVif is greater than
Gene id Gene ID
Gene id Gene ID contains
filter
Gene ID
Log2(WT/Mock)
Q_WT/Mock
P_WT/Mock
A_WT
B_WT
C_WT
A_ΔVif
B_ΔVif
C_ΔVif
Gag
5.78
8.28E-05
1.76E-07
0.74
0.82
0.77
0.77
1.0
0.7
Gagpol
3.59
1.53E-05
7.90E-09
0.78
1.0
0.74
0.81
0.91
0.72
Nef-P2A
4.75
8.49E-06
1.53E-09
0.93
0.83
0.89
1.0
0.85
0.94
Rev
3.38
1.96E-04
5.56E-07
0.83
0.96
0.72
0.83
0.84
1.0
SBP-dLNGFR
5.16
1.53E-05
1.09E-08
0.81
0.72
0.78
1.0
0.64
0.95
Vif
1.56
3.38E-02
1.90E-03
0.52
0.66
1.0
0.26
0.21
0.1
1 SV=1
0.07
8.29E-01
6.21E-01
0.76
0.85
1.0
0.73
0.7
0.8
1 SV=1
0.12
6.04E-01
3.18E-01
0.86
0.86
0.79
0.89
0.96
1.0
2 SV=1
0.19
8.17E-01
6.01E-01
0.83
1.0
0.4
0.66
0.82
0.68
2 SV=2
0.18
3.74E-01
1.23E-01
0.83
0.96
0.78
0.85
1.0
0.9
5 SV=1
0.11
7.57E-01
5.05E-01
0.8
0.72
1.0
0.81
0.71
0.98
5 SV=3
0.06
8.73E-01
7.11E-01
0.9
0.68
1.0
0.71
0.58
0.66
A2M
-0.18
7.52E-01
4.99E-01
0.67
0.76
0.48
0.61
1.0
0.52
AAAS
0.04
8.81E-01
7.25E-01
0.98
0.82
1.0
0.83
0.85
0.8
AACS
0.69
1.04E-03
8.13E-06
0.94
1.0
0.98
0.9
1.0
0.93
AAGAB
-0.47
5.29E-02
4.07E-03
0.56
0.7
0.73
0.85
0.85
0.9
AAK1
0.20
2.85E-01
7.43E-02
0.86
0.98
0.85
0.86
1.0
0.86
AAK1
0.28
1.31E-01
1.83E-02
0.9
1.0
0.8
0.95
0.95
1.0
AAMDC
0.26
5.42E-01
2.54E-01
0.89
0.72
0.91
0.89
0.68
1.0
AAMP
-0.27
1.29E-01
1.79E-02
0.79
0.86
0.72
0.8
0.86
0.76
AAR2
0.04
8.93E-01
7.51E-01
1.0
0.96
0.94
0.89
1.0
0.74
AARS
-0.34
7.11E-02
6.55E-03
0.7
0.67
0.7
0.75
0.69
0.73
AARS2
0.01
9.79E-01
9.45E-01
0.79
0.77
0.86
0.84
0.79
1.0
AARSD1
-0.16
4.53E-01
1.77E-01
0.8
0.73
0.87
0.82
0.83
0.8
AASDH
0.01
9.81E-01
9.49E-01
0.92
0.82
0.83
0.91
0.83
0.83
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